SE2020206

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5408
  • Medicago truncatula
  • SE2020206
  • Mutator
  • M56
  • MtChr3:35697966-35698173
  • ATTATATAT
  • TATATATGAGGAGTGCTATGAACACTCTCTTTCTAACACTCTCTCCAACACTCACTCTCTTATTGGGTGAAATTCATGTGGGTAGCATACATT

Secondary structure and sequence

TSD    TIR
5'



3' 
AT      -            T                A     T   C                      G    T         AG   A    GGAAA   A
  TATATA TGAGGAGTGCTA GAACACTCTCTTTCTA CACTC CTC AACACTCACTCTCTTATTGGGT AAAT CATGTGGGT  CAT CATT     TGG 
  |||||| |||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||||||||| |||| |||||||||  ||| ||||     ||| C
  ATATAT ACTCTTTACGAT CTTGTGAGAGAAAGAT GTGAG GAG TTGTGAGTGAGAGGATAACCTA TTTG GTACACCCA  GTG GTAA     ACC 
 T      T            T                C     T   A                      A    T         GA   -    AATAC   C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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