Plant MITE

SE2050211

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5413
Medicago truncatula
SE2050211
PIF/harbinger
To11
MtChr2:8314201-8314450
TAA
GGTGTGTTTGGATTGAAAGTTTAGGAGGGGAA

Secondary structure and sequence

TSD TIR

5'

3'

TAAT                AA              -GGGA   G              T            CA  TA     C        CAAAAC    -   T     A  GA     T   TGTT
    GGTGTGTTTGGATTGA  GTTTAGGAGGGGAA     GGA AGGGTTTGATTTTC TTTTTAAATTAC  AC  TATAA ATGTTTTT      TAAA TTA GCGTG TT  AGTAT ATA    
    ||||||||||||||||  ||||||||||||||     ||| |||||||||||||| ||||||||||||  ||  ||||| ||||||||      |||| ||| ||||| ||  ||||| |||     
    CCACACAAACCTAACT  CAAGTCCTCCCTTT     CCT TCCCAAACTAAAAG AAAAATTTAATG  TG  ATATT TACAAAAA      ATTT AAT CGTAT AA  TCGTA TAT    
AATC                CC              GATTG   -              T            CC  TG     T        ---AAA    C   -     -  --     C   TTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050211

TAATGGTGTGTTTGGATTGAAAGTTTAGGAGGGGAAGGGAGGAGAGGGTTTGATTTTCTTTTTTAAATTACCAACTATATAACATGTTTTTCAAAACTAAATTATGCGTGATTGAAGTATTATATGTTTGTTTATCATGCTAATATGCTAACTTTAAAAAAAAACATTTTATAGTGTCCGTAATTTAAAAATGAAAATCAAACCCTTCCGTTAGTTTCCCTCCTGAACCCTCAATCCAAACACACCCTAA

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