Plant MITE

SE2010214

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5416
Medicago truncatula
SE2010214
Tc1/Mariner
St20
MtChr3:43983605-43983898
TA
TCATATTTGTCCCGTAATAATCGAGTCATTTG

Secondary structure and sequence

TSD TIR

5'

3'

 TA  ATA          AA          A    CA    AACATTATTCCAAAAAAATTGACGAATTTCACTTTTCAATACAATAATAATTACTTTTTTTTCAATTATGACTCTAATTAATATTACTTTCATCACTCCTAATTCAA
   TC   TTTGTCCCGT  TAATCGAGTC TTTG  GGAA                                                                                                           
   ||   ||||||||||  |||||||||| ||||  ||||                                                                                                            
   AG   AGGCAGGGTA  ATTGGCTCGG AAAC  GTAA                                                                                                           
ATG  -GG          AA          A    AA    ACTGTGTATAATTCTTTTTCACATATTCACTTTCTCTTTCTTTTTATCAAAACTCACACAGTTTATAACTACGTAAGGAAGAATAGTATCTACGTTTTATCTTATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010214

TATCATATTTGTCCCGTAATAATCGAGTCATTTGCAGGAAAACATTATTCCAAAAAAATTGACGAATTTCACTTTTCAATACAATAATAATTACTTTTTTTTCAATTATGACTCTAATTAATATTACTTTCATCACTCCTAATTCAATATATTCTATTTTGCATCTATGATAAGAAGGAATGCATCAATATTTGACACACTCAAAACTATTTTTCTTTCTCTTTCACTTATACACTTTTTCTTAATATGTGTCAAATGAACAAAAGGCTCGGTTAAAATGGGACGGAGGGAGTA

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