Plant MITE

SE2020217

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5419
Medicago truncatula
SE2020217
Mutator
M74
MtChr5:37468916-37469118
AAATATATT
T

Secondary structure and sequence

TSD TIR

5'

3'

    AAA     - GGATTA G   ---       -  CTAAAGACATAAGTTAAGGAGCTTAAAGTATAATTAACAAATAAATTTTATATTTAAATATGATAACTTTT
       TATAT T      T TTA   ATTTATG TC                                                                       
       ||||| |      | |||   ||||||| ||                                                                       G
       AAATA A      A ATT   TATATTA GT                                                                       
GTGAATT     G ------ -   AAA       A  AATAATTGTATCGTAATAGTTGTTGCATCTTTGAAAAAAATTTTTCAAAAAAAATTTAAAAAATTTTCAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020217

AAATATATTGGATTATGTTAATTTATGTCCTAAAGACATAAGTTAAGGAGCTTAAAGTATAATTAACAAATAAATTTTATATTTAAATATGATAACTTTTGAAACTTTTAAAAAATTTAAAAAAAACTTTTTAAAAAAAGTTTCTACGTTGTTGATAATGCTATGTTAATAATGAATTATATAAATTAAAGATAAATTAAGTG

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