SE2030219

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5421
  • Medicago truncatula
  • SE2030219
  • hAT
  • Hat16
  • MtChr2:27724916-27725673
  • TATATATA
  • TATATATATAGGGCTGGAAATGAGTCGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                 A          -         ------------      AC  GCCCGAGCTCGGTTCGACTCGATAAAAATTGGTTCGGCTCGAAACTCGGCTCGAGTTCGACACGAACTATTTTTTCAGCTCGAGTTCGGCTCGTTTAAAGTTCACGAACAGTTCGGTTCGGCTCGTTAGGTTCAGTTCGGTTGCTCAACTCGTCCAAAAAAATTATAAAAAAAAATTAATTTATAGATCTTTGATATTATATATATATATATATATATATATATATATAAATTAAATATTGAATTAAAATAAAAGTTTCCACAAGCATGCATATAATAGACATAAATTATATAAAGTTAAAGGTTGCATAAATACGAAGAAAAATA
TATATATATAGGGCTGG AATGAGTCGA GTCGAGTTG            AACCGA  CT                                                                                                                                                                                                                                                                                                                                      
||||||||||||||||| |||||||||| |||||||||            ||||||  ||                                                                                                                                                                                                                                                                                                                                      T
ATATATATATCCCGACT TTACTTGGCT AGTTGAGCT            TAAGCT  GA                                                                                                                                                                                                                                                                                                                                      
                 G          T         AATATCAAGCTG      --  GCTATAGATTAGGCAACTTGAACTAAGTACTTGGATTGCTCGACCTGAACTCGACTTTTAATTCAAGCAATTAATTTACTCGACTTGTATTCGATGTATATCAAGCTGAGCAATCCAATTACTCTACCGAGCTAATAGCTAATATATATATTTAGTTAAACTCAATCAAAAATTTTTTTAAATTAAGTTTACACCGTTTACACCGACTTATGTTAAAACAGAACTTCCCTTCTCGTCAACCTCAAATTTTAATTTTCTTATAATACTTAAAACAAGTGTCGATTAACTTAAAACAACCTAAAAAAACAGAGACAATGAACATAGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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