SE2020222

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5424
  • Medicago truncatula
  • SE2020222
  • Mutator
  • M39
  • MtChr1:13683689-13684069
  • TTATTTTTA
  • AGGCTAAAATATGGTTTTAGTCCCTGCAAATATGTCTCGTTTTGGTTTTAGTCCCTTGTAAAAAAAAAATTTGTTTTTGGTCCCTGCAAAATTTTTTGTTTTTGAAAATAGTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTTTT                                                        T           AT                      T                     ATGACCCCACTT        AT    ATACGTGACACATTATAACTGAACCAATTTTGTAGTTTTTGGTCCC
        AGGCTAAAATATGGTTTTAGTCCCTGCAAATATGTCTCGTTTTGGTTTTAGTCCCT GTAAAAAAAAA  TTGTTTTTGGTCCCTGCAAAAT TTTTGTTTTTGAAAATAGTCC            TTGTGATG  TTGC                                              
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||| |||||||||||||||||||||            ||||||||  ||||                                               
        TCCGATTTTATACCAAAATTAGGGACGTTTATACGGAGCAAAACCAAAATCAGGGA CATTTTTTTTT  AACAAAAACCAGGGACGTTTTA AAAACAAAAACTTTTATCAGG            GATAAAAG  TTTT                                              
ATTTTTAT                                                        C           --                      T                     ---GATCTCCCT        --    TGTTTTTTAAAACGTTCCTGGAAAAAATTTTTGTTTTATAAAACGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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