Plant MITE

SE2020225

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5427
Medicago truncatula
SE2020225
Mutator
M75
MtChr3:42086058-42086252
TTTAAATTT
AAATTTTGGGTCTTGCTAACCAGTGCCCTAAGGGCAGTGGTTAAAG

Secondary structure and sequence

TSD TIR

5'

3'

TTT      -T   TCT         G      AA     G         ATTCCATTAATAAAAAC    TCATGGAAATACAAGTCTTTACTTTTTTCTTATCAA
   AAATTT  GGG   TGCTAACCA TGCCCT  GGGCA TGGTTAAAG                 TTTG                                    
   ||||||  |||   ||||||||| ||||||  ||||| |||||||||                 ||||                                    T
   TTTAAA  TCC   ATGATTGGT ACGGGA  CCCGT ACCAATTTC                 ATGA                                    
  T      TT   TTT         A      AC     A         -----------------    TTTTATTCATTCAAACGTAGCTTTTCACCAAATTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020225

TTTAAATTTTGGGTCTTGCTAACCAGTGCCCTAAGGGCAGTGGTTAAAGATTCCATTAATAAAAACTTTGTCATGGAAATACAAGTCTTTACTTTTTTCTTATCAATGATTAAACCACTTTTCGATGCAAACTTACTTATTTTAGTACTTTAACCAATGCCCCAAGGGCAATGGTTAGTATTTCCTTTAAATTTT

Copy Cancel