Plant MITE

SE2050229

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5431
Medicago truncatula
SE2050229
PIF/harbinger
To8
MtChr6:3850678-3850951
ATA
GGGCCTGTTGGGATTGGCTTATTTGGGCTT

Secondary structure and sequence

TSD TIR

5'

3'

ATA         G    ---TG         G    ATCTA  G   TAATTTTTGTGAGACTGTTTGGGATAACTTATGAAAATAGTTTATGACAATTTTCATAAGCTTTTTTCAACTTATTTTCATAAGCTCTCCAAT
   GGGCCTGTT GGAT     GCTTATTTG GCTT     CT GCA                                                                                             
   ||||||||| ||||     ||||||||| ||||     || |||                                                                                             A
   CCCGGACAA CCTA     TGAATAAAC TGAA     AT AGT                                                                                             
ATA         A    TTTGA         G    ---AA  -   GTTTGCGAATACATATTCGAACGAATTCGATAAAAAGACCGTTTTCTATTTAATGGCAATTTAACAAAAGCATATCCAACAAATATGTTTGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050229

ATAGGGCCTGTTGGGATTGGCTTATTTGGGCTTATCTACTGGCATAATTTTTGTGAGACTGTTTGGGATAACTTATGAAAATAGTTTATGACAATTTTCATAAGCTTTTTTCAACTTATTTTCATAAGCTCTCCAATATAGTTTGTATAAACAACCTATACGAAAACAATTTAACGGTAATTTATCTTTTGCCAGAAAAATAGCTTAAGCAAGCTTATACATAAGCGTTTGTGATAAAAAGTGCAAATAAGTAGTTTATCCAAACAGGCCCATA

Copy Cancel