SE2020230

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5432
  • Medicago truncatula
  • SE2020230
  • Mutator
  • M78
  • MtChr2:24733303-24733690
  • AAATGTTTT
  • AAATGTTTTCAAGTAAACCATCAAATTGGTTCTTGTCTTTGTACCAAATTCTCAATTTGGTCCTTGACTCTATTAATAACTGAAAATGGTCTCTGTCTTTGTGAAATGTTTCTCAAATTGATCCCTGACTCTATTAGTTGTTTTGTATTTTGAGTGTTAATGACTCAGTATCTTTTAGATATTATTTA

Secondary structure and sequence

TSD    TIR
5'



3'
          TCA                                            T      C                  GAA        C         G          CAA    ATC C                              -G      -   C    ---   TTT  A      -   GTGG
  AAATGTTT   AGTAAACCATCAAATTGGTTCTTGTCTTTGTACCAAATTCTCAA TTGGTC TTGACTCTATTAATAACT   AATGGTCT TGTCTTTGT AAATGTTTCT   ATTG   C TGACTCTATTAGTTGTTTTGTATTTTGAGT  TTAATG ACT AGTA   TCT   AG TATTAT TTA    
  ||||||||   |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||   |||||||| ||||||||| ||||||||||   ||||   | ||||||||||||||||||||||||||||||  |||||| ||| ||||   |||   || |||||| |||     
  TTTGTAAA   TCATTTGGTGGTTTAATCAGGGATAGAAACATGGTTTAAGAGTT AACCAG GACTGAGATAATTATTGA   TTACCAGA ACAGAAACA TTTGTAAAGA   TAAC   G ACTGAGATAATCAACAAAACGTAAAATTCG  AGTTGC TGG TTAT   AGG   TC GTAATA AGT    
CT        --C                                            T      A                  --G        A         G          ATC    CAT A                              GT      A   T    TCT   TTT  C      C   AATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End