Plant MITE

SE2020232

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5434
Medicago truncatula
SE2020232
Mutator
M12
MtChr5:11527494-11527757
AAGCTAATA
AGCT

Secondary structure and sequence

TSD TIR

5'

3'

    A    AATA   C G                                   A                     T T    TGT    -  -          ATGTACTTAATGGTTTCCAGCACCCTGCATAAAT
     AGCT    GGG T CGGTTATGGTGCATAAGGAAATCCTTATGCACCCT CATAAATTCAGAAATGGTTTT G GAGT   ACTC CA AAACCATTAG                                  
     ||||    ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||   |||| || ||||||||||                                   
     TCGA    CCC A GCCAATACCACGTATTCCTTTAGGAATACGTGGGA GTATTTAGGTCTTTACCAAAA C CTTA   TGAG GT TTTGGTAAAG                                  
GATAA    ---A   A -                                   C                     - -    TGT    T  C          GTGTCGTTTTACCAAAACTGTATTAACCCAACCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020232

AAGCTAATAGGGCTGCGGTTATGGTGCATAAGGAAATCCTTATGCACCCTACATAAATTCAGAAATGGTTTTTGTGAGTTGTACTCCAAAACCATTAGATGTACTTAATGGTTTCCAGCACCCTGCATAAATCCCAACCCAATTATGTCAAAACCATTTTGCTGTGGAAATGGTTTCTGTGAGTTGTATTCCAAAACCATTTCTGGATTTATGCAGGGTGCATAAGGATTTCCTTATGCACCATAACCGAACCCAAGCTAATAG

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