SE2020236

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5438
  • Medicago truncatula
  • SE2020236
  • Mutator
  • M80
  • MtChr3:36349822-36350224
  • TAAAATTAA
  • AGGTTAAATTATATTAGGGGTCTTTAATTTGAGGTTTGTAACAGATTGATCTTTTAAATTATTTTGGTCACACCTAAGTCATTTAAGTTTGAGGTTTGTACCAGATTGATCCTTTAAGTTATTTTGGTCGCATATTAGTCTTTTAAGTTTGTAAATGTTTTCGATTTAGTC

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAATTA                      -     -                              A               C      A   A               C  G    A                          T                                   ATTT   CAC    -T    TT
        AGGTTAAATTATATTAGGGGTC TTTAA TTTGAGGTTTGTAACAGATTGATCTTTTAA TTATTTTGGTCACAC TAAGTC TTT AGTTTGAGGTTTGTA CA ATTG TCCTTTAAGTTATTTTGGTCGCATAT AGTCTTTTAAGTTTGTAAATGTTTTCGATTTAGTC    TGT   ATCA  CGTT  
        |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||||| || |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    |||   ||||  ||||  T
        TCCAATTTAATGTAGTTCCCAG AAATT AAACTTTAAACATTGTTTAACTAGGAAATT AATAAAACTAGTGTG ATTCAG AAA TCAAACTCCAAACGT GT TAAC AGGAAATTCAATAAAACCAGTGTGTA TCAGAAAATTCAAACATTTGCAAAAGTTAAATCAG    ACA   TGGT  GCAA  
AATTAAAA                      G     C                              C               T      G   C               T  A    C                          T                                   GAAT   -AT    TT    TG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End