Plant MITE

SE2020237

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5439
Medicago truncatula
SE2020237
Mutator
M81
MtChr8:23400979-23401197
AAATTTATA
TGGAAAATGCTATTTCTCTAGAAAAATAGCATCAAGAATTTTTCAAGA

Secondary structure and sequence

TSD TIR

5'

3'

AAATTTATA   AA    C   T                  C               ----CA   CT     ATTTTAATTACATATTTATTTGTTCACTTCCTATTTTTCA
         TGG  AATG TAT TCTCTAGAAAAATAGCAT AAGAATTTTTCAAGA      AAG  GACAA                                        
         |||  |||| ||| |||||||||||||||||| |||||||||||||||      |||  |||||                                         
         ACT  TTAC ATA AGAGATCTTTTTATTGTA TTCTTAAGAAGTTCT      TCG  TCGGT                                        
 TATATTTA   CG    A   T                  A               TATTTC   --     TAGTGTTACGTGATGAACGGTGTTAAGTTCCTCCACACCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020237

AAATTTATATGGAAAATGCTATTTCTCTAGAAAAATAGCATCAAGAATTTTTCAAGACAAAGCTGACAAATTTTAATTACATATTTATTTGTTCACTTCCTATTTTTCAGCCACACCTCCTTGAATTGTGGCAAGTAGTGCATTGTGATTGGCTGCTCTTTATTCTTGAAGAATTCTTAATGTTATTTTTCTAGAGATATAACATTGCTCAATTTATAT

Copy Cancel