SE2020238

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5440
  • Medicago truncatula
  • SE2020238
  • Mutator
  • M82
  • MtChr7:22523501-22523889
  • TTGGTTTTA
  • GGTTTTAGGGTTAGATAAATTTTCAATCCTTATAAATATATTAAATTTTGATTTTAGTCTTTAAAAAATTAAATTGAATGTTTTCATTCTCACA

Secondary structure and sequence

TSD    TIR
5'



3'
 TT    TT            -A     AA                        A    A            T    T   -AT               -------CAAAAAAAAAA      C       CCACTTTATTT      GAA  T  AAA  GT   T  TT    TTCAAAT     CC    TA  T    TT
   GGTT  AGGGTTAGATAA  TTTTC  TCCTTATAAATATATTAAATTTTG TTTT GTCTTTAAAAAA TAAA TGA   GTTTTCATTCTCACA                  TTGGTC TTAATGG           TCATGT   TG CA   TT  AAC AT  TATG       TGTAT  AAGT  TG ACGT  
   ||||  ||||||||||||  |||||  |||||||||||||||||||||||| |||| |||||||||||| |||| |||   |||||||||||||||                  |||||| |||||||           ||||||   || ||   ||  ||| ||  ||||       |||||  ||||  || ||||  A
   TTAG  TCCCAATTTATT  AAAAG  AGGGATATTTATATAATTTAAAAC AAAA CAGGGATTTTTT ATTT ACT   CAAAAGTAGGAGTGT                  AATCAG GATTACC           AGTACA   AC GT   AA  TTG TA  ATAC       ATATA  TTTA  AC TGCA  
ATT    -T            CA     -C                        G    G            T    T   CTT               TTAAAAAAACAAAATAAA      T       TATATTAAAAC      AAA  T  AAA  AT   -  TT    -----TT     --    CA  T    TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End