SE2020245

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5447
  • Medicago truncatula
  • SE2020245
  • Mutator
  • M12
  • MtChr4:5914186-5914459
  • CATTCTAAC
  • GGCTGCGGTTATGGTGCATAAGGAAATCCTTATGCACCCTGTCATAAATCCAGAAATGGTTTCTGTGAGTTGTATTCCAAAACCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
CATTCTAAC  C       A              A          C    T       C            C  T    TGT    -  -        AG      TTAA ------- GTTTTCAGCACCCTGCATATATCATA
         GG TGCGGTT TGGTGCATAAGGAA TCCTTATGCA CCTG CATAAAT CAGAAATGGTTT TG GAGT   ATTC CA AAACCATT  ATGTGC    T       G                          
         || ||||||| |||||||||||||| |||||||||| |||| ||||||| |||||||||||| || ||||   |||| || ||||||||  ||||||    |       |                           
         CC ACGCCAA ACTACGTATTCCTT AGGAATACGT GGAC GTATTTA GTCTTTACCAAA AC CTCA   TGAG GT TTTGGTAA  GTGTCG    T       A                          
CAATCTTAC  C       A              G          A    -       A            -  -    TGT    T  C        AG      ---- TTTATCA AAACGTATTAAAATATGTTTTGTATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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