SE2030247

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5449
  • Medicago truncatula
  • SE2030247
  • hAT
  • Hat20
  • MtChr4:15611038-15611534
  • TTCCTTTG
  • GTAGGGATGACAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCCTTT         A    T      ----- G    GATAG      ---  ATAAAAA    GTAATGGGTAGGGTAAAACTCCGCTTTCGTGGGTATGGGCATGGGTCCGGGTAATTACCCGCAAACTTAAAAGGGTACGGGCACGGGTATGGGCACTATACTACCCAGCCCCGCAACCTGCATATATGTTTTTATTTTAATTTTCGAAAGATATTTTGGATGTTTTTTTATTTGGCTAAATACTACGATTCAT
       GTAGGGATG CAAT GGACCC     A GCCC     ATACCC   AC       ATCC                                                                                                                                                                                                 
       ||||||||| |||| ||||||     | ||||     ||||||   ||       ||||                                                                                                                                                                                                 A
       TATCCCTAC GTTA CCTATG     C CCGT     CCCATA   TC       GTGG                                                                                                                                                                                                 
GTTTCCT         C    -      AGTTA -    -----      ACA  -------    GTAGAGGTATAAGCACAAACATTTTTTACAGACATGGGAGTACCCGTTGTTGAAATCACGGTAAGAGATATGTGCTACCACGAGAATGGGCGTGGGTAATGGGCGTAAAATTGATACTTTACTGTTATTTTTTTTGGTGGTGTTAACTTTATTTTGATACTAAGTTTTTAAAAGTTTAGTTGAGTATTTTATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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