SE2020249

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5451
  • Medicago truncatula
  • SE2020249
  • Mutator
  • M84
  • MtChr4:4509092-4509633
  • ATGATTTTA
  • TGATTTTAGGGTTAAATATGTTTTTGGTCCCTACATTTTGCGCAATTTTGAAAATAGTCCATACATTTCAATGAATGTTTTTAAAATCCCTACATTTTTTCTCCGTTAGTGCAATTGGTCCCTG

Secondary structure and sequence

TSD    TIR
5'



3'
A   TT   -                         CA        A       A   -     A                          C              CC       C  T         CCATCA T   A GTTGATGAAACACAGGCCATCATAACAAGTTCAACCCCACCCCACCAAATCTCCACCACAACACCTTCCACACCCACAACAACAAGCGCTTTCAACGATAACATCATCGCTTTCGGCCTCCAAATCTTCCCCTCT
 TGA  TTA GGGTTAAATATGTTTTTGGTCCCTA  TTTTGCGC ATTTTGA AAT AGTCC TACATTTCAATGAATGTTTTTAAAAT CCTACATTTTTTCT  GTTAGTG AA TGGTCCCTG      G GCC T                                                                                                                                       
 |||  ||| |||||||||||||||||||||||||  |||||||| ||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||| || |||||||||      | ||| |                                                                                                                                       A
 ATT  AGT CCCAATTTATACAAAAACCAGGGAT  AAAACGTG TAAAACT TTA TCAGG ATGTAAAGTTATTTACAAAAATTTTA GGATGTAAAAAGGA  CAATCAC TT ATCAGGGAC      C AGT T                                                                                                                                       
    TT   A                         TC        C       C   A     A                          A              CT       A  T         ----AA -   - TAAAGATTGCACTACGGTTACAACCGCCAAGTTAGAGCGGCCTTTTACCGCCTCTTGAAGTGGTGCTTGAAAGAGGCGTCGAAGCATCTACGCCTAGCGGCCACAAGCAGTGTGAAGACCACTTTATACAACCAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End