SE2020251

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5453
  • Medicago truncatula
  • SE2020251
  • Mutator
  • M28
  • MtChr6:12822354-12822727
  • TAGATTAAA
  • AGGCTTAATTGCACTTTTCCCCCTAACTTTTGCTAATTGTGCGATTTTGCACCCCCTCTTTTTTTTTGAGCGATTTTGCACCCCATCTTTTTGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGATTAA                        -AA      C                 A  C             -                        T   ----CCCTTTCT   T  ATGGACCTTCTTGTGTTTAGTTGCACTTTTGCCCCCTATCTTCTTGTCAATTGTGCGATTTTGCACCC
        AGGCTTAATTGCACTTTTCCCCCT   CTTTTG TAATTGTGCGATTTTGC CC CCTCTTTTTTTTT GAGCGATTTTGCACCCCATCTTTT GCC            GGT AG                                                                    
        ||||||||||||||||||||||||   |||||| ||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||| |||            ||| ||                                                                     
        TCCGAATTAACGTGAAAAGGGGGG   GAAAAC ATTAACACGCTAAAACG GG GGAGAAAAAAGAA CTCGCTAAAACGTGGGGTAGAAAA TGG            AAG TT                                                                    
AAATTAGA                        ATA      A                 C  A             A                        -   TTAACACAAAAC   -  TTAGTAGTAATTTTCTCCCCTTTCCCCCATTTTCTACCCCACTTTTTAGCGAGTTTTTTTTCTTCTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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