SE2020254

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5456
  • Medicago truncatula
  • SE2020254
  • Mutator
  • M40
  • MtChr4:2168680-2169116
  • AAAAAAATT
  • GGCTTAATTGCATGTTTGATCCCTTACATTTATTTTAGTTTTTAAGTTGATCCCTTATGTTTTAAAAGTTTCAAGTTGGTCCTTTACGTTTTAAAAGTTTCAAGTTGGTCCAAAACGTTACTCACGTTGGAATAAGTTAGTCCCTTCAGTCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAAAATT  C                  C    CA                     A                     C                            C                                              AGT   -----------TT    TTTGAAGATTCGGTTTACAATATGGGTGATGAAACTTAACTTATTT
         GG TTAATTGCATGTTTGATC CTTA  TTTATTTTAGTTTTTAAGTTG TCCCTTATGTTTTAAAAGTTT AAGTTGGTCCTTTACGTTTTAAAAGTTT AAGTTGGTCCAAAACGTTACTCACGTTGGAATAAGTTAGTCCCTTC   CAC             AATG                                              
         || |||||||||||||||||| ||||  ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||             ||||                                              A
         CC AATTAACGTACAAACTAG GAAT  AAATAAAATCAAAAATTCAAC AGGGAATACAAAATTTTTAAA TTCAACCAGGGAATGTAAAATTTTCAAA TTCAACCAGGTTTTGCAATGAGTGTAACCTTATTCAATCAGGGAAG   GTG             CAAA                                              
TTAAAAAAT  A                  A    AC                     C                     A                            A                                              ---   CTGTACTATAACT    TTATTTTGTTTTTTTTTAATTTTTTTTACAAAAGTTTAACTAAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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