Plant MITE

SE2030255

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5457
Medicago truncatula
SE2030255
hAT
Hat21
MtChr3:30864941-30865248
AGTAAGAG
CAGGGGCGTCCCTGAGGGGGTGCA

Secondary structure and sequence

TSD TIR

5'

3'

AGTAAGAG     G           ------    G  AA    ---  AAACGAGTTGGGCCTCCCACAAGGATGGGCCTCAAGAGTGGGGGTTCCTCATGATTGATTTTGGTGTTAAGTAGGGGTTCCTCATGTATACGGTAGTCATTTTCACCTCT
        CAGGG CGTCCCTGAGG      GGGT CA  CAGC   TC                                                                                                              
        ||||| |||||||||||      |||| ||  ||||   ||                                                                                                              G
        GTCCC GCAGGGACTCT      TCCG GT  CGAG   TT                                                                                                              
GAGAATGA     G           TAAGCT    A  --    CCC  TACTTTTCTCCGGTCACTATTTTAGTTTTACAGAAAAAAAAATTTTCTCGCTACAAGATAAATATAAAAAATTTTCTATTTATGTTCCACGGCATATATACGCCATATGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030255

AGTAAGAGCAGGGGCGTCCCTGAGGGGGTGCAAACAGCTCAAACGAGTTGGGCCTCCCACAAGGATGGGCCTCAAGAGTGGGGGTTCCTCATGATTGATTTTGGTGTTAAGTAGGGGTTCCTCATGTATACGGTAGTCATTTTCACCTCTGAGTATACCGCATATATACGGCACCTTGTATTTATCTTTTAAAAAATATAAATAGAACATCGCTCTTTTAAAAAAAAAGACATTTTGATTTTATCACTGGCCTCTTTTCATTTCCCGAGCTGAGCCTTCGAATTCTCAGGGACGGCCCTGAGTAAGAG

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