Plant MITE

SE2020257

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5459
Medicago truncatula
SE2020257
Mutator
M2
MtChr8:9087270-9087469
TTCTTAATT
GAGAAATGATATTTGTACAACCATTTTTTAATAATTTTTAGACAAC

Secondary structure and sequence

TSD TIR

5'

3'

TTCTTAATT   A          GT     C    T           -TA      TTTCTCT     ACTCACATTATATTCTTACTCTCTCTTCCT          - -     TTTT
         GAG AATGATATTT  ACAAC ATTT TTAATAATTTT   GACAAC       CTCAT                              TTTTCTCTCT C CATTG    
         ||| ||||||||||  ||||| |||| |||||||||||   ||||||       |||||                              |||||||||| | |||||     
         CTC TTACTATAAA  TGTTG TAAA GATTGTTGAAG   CTGTTG       GAGTA                              AAAAGAGAGA G GTAAC    
TTAATTCTT   G          AT     A    C           TTA      -------     ------------------------------          A A     CATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020257

TTCTTAATTGAGAAATGATATTTGTACAACCATTTTTTAATAATTTTTAGACAACTTTCTCTCTCATACTCACATTATATTCTTACTCTCTCTTCCTTTTTCTCTCTCCATTGTTTTTTACCAATGAGAAGAGAGAAAAATGAGGTTGTCATTGAAGTTGTTAGCAAATAGTTGTTAAAATATCATTGCTCTTCTTAATT

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