Plant MITE

SE2020259

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5461
Medicago truncatula
SE2020259
Mutator
M86
MtChr1:8399206-8399390
TATAAAATT
GGCAAATGTTAA

Secondary structure and sequence

TSD TIR

5'

3'

TATAAAATT  CAA       --C   TGCTCTCAAGGGCACATGTTAAGGAACTTATTATAGAAATATACGTATTAAAAGTCGTGCAGTCAA
         GG   ATGTTAA   TTG                                                                  
         ||   |||||||   |||                                                                  C
         CC   TACAATT   CCC                                                                  
TTAAAATAT  AAG       AAA   GTGTACAATTCCTTGGATTTTACTCGTTGAAACGTAACCTTTTGTACTATTAAATTGAAAATTCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020259

TATAAAATTGGCAAATGTTAACTTGTGCTCTCAAGGGCACATGTTAAGGAACTTATTATAGAAATATACGTATTAAAAGTCGTGCAGTCAACTTCTTAAAAGTTAAATTATCATGTTTTCCAATGCAAAGTTGCTCATTTTAGGTTCCTTAACATGTGCCCAAATTAACATGAACCTATAAAATT

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