Plant MITE

SE2020262

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5464
Medicago truncatula
SE2020262
Mutator
M87
MtChr2:381850-382042
TTATTTTAA
TAAGCGTCTTGTTAACGAGTGCCCCCAGG

Secondary structure and sequence

TSD TIR

5'

3'

 TTATTT    C TCT       G     C   A  ATACTCTTTAAATATTCTATATT   TAATTATTCTTTAAAAATGTTAAATTTTCAATTTCCAATG
       TAAG G   TGTTAAC AGTGC CCC GG                       AAG                                        
       |||| |   ||||||| ||||| ||| ||                       |||                                         
       ATTC C   ACAATTG TCACG GGG CC                       TGA                                        
AAATTTT    C TTT       A     A   C  ----------CGTAACCAATTTC   AATTTACCATTGAAAAATACTTTCAAACACATTTTTTCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020262

TTATTTTAAGCGTCTTGTTAACGAGTGCCCCCAGGATACTCTTTAAATATTCTATATTAAGTAATTATTCTTTAAAAATGTTAAATTTTCAATTTCCAATGCACTTTTTTACACAAACTTTCATAAAAAGTTACCATTTAAAGTCTTTAACCAATGCCCCGGGAGCACTAGTTAACATTTCCCTTATTTTAAA

Copy Cancel