SE2020265

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5467
  • Medicago truncatula
  • SE2020265
  • Mutator
  • M39
  • MtChr5:36100795-36101174
  • TTTCTCATA
  • AGGCTAAAATATGGTTTTAGTCCCTGCAAATATGTCTCGTTTTGGTTTTAGTCCCTGTAAAAAAAAATTGTTTTTGGCCCCTGCAAAATTTTTTGTTTTTGAAAATAGTCCCTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTCTCAT                                                                     -        CC                                   -ATC    TTT     TGATTTGCATACGTGGCACATTATAACTGAACCAATTTTGTAGTTTTTGGTCCC
        AGGCTAAAATATGGTTTTAGTCCCTGCAAATATGTCTCGTTTTGGTTTTAGTCCCTGTAAAAAAAAATT GTTTTTGG  CCTGCAAAATTTTTTGTTTTTGAAAATAGTCCCTG    CCAC   TGTGA                                                      
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||    ||||   |||||                                                       
        TCCGATTTTATACCAAAATCAGGGACGTTTATACGGAGCAAAACCAAAATCAGGGACATTTTTTTTTAA CAAAAACC  GGACGTTTTAAAAAACAAAAACTTTTATCAGGGAT    GATA   AAAGT                                                      
ATACTCTT                                                                     A        -A                                   CCCT    ---     TTTTGTTTTTTAAAACGTCCCTGGAAAATTAAAAATTTTTGTTTTATAAAACGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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