SE2030266

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5468
  • Medicago truncatula
  • SE2030266
  • hAT
  • Hat16
  • MtChr5:41323407-41324189
  • CCTAACCC
  • TAGGGCTGACAATGAACCGA

Secondary structure and sequence

TSD    TIR
5'



3' 
CCTAACCC        AC     AC   TACAA    AA         ----  ACT  -  TCGGTAATTAGTTCGTTGAACTTGGTTCATGAACCAAATGAGCCGAACTTGAGCTAAAGATTAAGTTCGTTAACTAAATGAGTTGAACTTGAGTTATATGTAGTTCGACCCGTTTGGTTCACGAACTGACTCGATTATATATATATATAGACACACACACACACAAAGCTAGGTAATAGTATTTAACTAATAGTAAAATATAATAGAAGCAATATAAAACAACAATAGTAACAGAGTGGACTTGGATAGTTTTTAGCAATGGAAATATGTTGCTTGTAGTGCCATGGTGTTTTAGCAAAGCTGCACTACTTTGTTTTTGTCCCACATCGAAAGTAT
        TAGGGCTG  AATGA  CGA     CTCG  TAAAGTTCG    GA   CG AC                                                                                                                                                                                                                                                                                                                                                
        ||||||||  |||||  |||     ||||  |||||||||    ||   || ||                                                                                                                                                                                                                                                                                                                                                T
        ATCCCGAC  TTATT  GCT     AGCT  CAGCTTAAA    CT   CG GC                                                                                                                                                                                                                                                                                                                                                
CCCAATCC        CT     CA   ----C    --         CAAA  ---  A  CAAACTATTCTTAACCAAGCCGAGCTTTGAGCTGAGCTCAAGTTTTGCTTGGAAAAAAACCCGAGCTCAAGCCGAGCAAATTTCAAGTGCTCGTTGAGCCAAGCCGAGCAATCCAAGTAAATGAGCTTAGTGTATTAAAATTTTAAATAAAAAAATAAATTTTTTAACGTATAAAATTTGGATAATTATAAAAGTTTTTTTAATATTTATTTTTTTTTTTGATTTCATTTCTCCTGAGTCGGTAAGGTGTTGGCACTTTATTATCTAACAGGTGGAAGCATAGTTTCTCATCGTTTCGGCGAAGAAAATATCTGTTCATAACAACATAGATAGAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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