Plant MITE

SE2050267

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5469
Medicago truncatula
SE2050267
PIF/harbinger
To13
MtChr5:7734989-7735130
TAA
AGTGCATGTTTGGATAGTGAGTTTGATAAAATTACGGTGACACCATGATTTTGTTGAAGCTATAAAATGTAACTTTTGTCAAAATTACAGTGGTTCACCGTGATTATGTTAAACTCAC

Secondary structure and sequence

TSD TIR

5'

3'

TA               ----A            A           C     ---       -TT    C    A
  AGTGCATGTTTGGAT     GTGAGTTTGATA AATTACGGTGA ACCAT   GATTTTG   GAAG TATA 
  |||||||||||||||     |||||||||||| ||||||||||| |||||   |||||||   |||| |||| A
  TCATGTACAAACCTA     CACTCAAATTGT TTAGTGCCACT TGGTG   TTAAAAC   TTTC ATGT 
AA               ACTGC            A           -     ACA       TGT    A    A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2050267

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2050267