SE2020276

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5478
  • Medicago truncatula
  • SE2020276
  • Mutator
  • M76
  • MtChr8:15967929-15968133
  • TATTAAGAA
  • TTAAGAAGGGAAATGCTAACCCGGTGCCTCCGGGGCACTGGTTAAGGATATGAAAAAGGAAATTATATAATAGTTAATGCATTGAAATTGTGTAA

Secondary structure and sequence

TSD    TIR
5'



3'
 TA    GA    AAA        C            G           G    G -      A      ----    T  TT   --GCA    AA    -    TT
   TTAA  AGGG   TGCTAACC GGTGCCTCCGGG CACTGGTTAAG ATAT A AAAAGG AATTAT    ATAA AG  AAT     TTGA  TTGT GTAA  
   ||||  ||||   |||||||| |||||||||||| ||||||||||| |||| | |||||| ||||||    |||| ||  |||     ||||  |||| ||||  A
   AATT  TCCC   ACGATTGG CCACGGGGGCCC GTGACCAATTC TATG T TTTTCC TTAATA    TATT TC  TTG     AACT  AATA TATT  
AAG    -A    AGG        -            -           G    G A      C      ATGG    T  CT   ACAAA    GA    A    TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End