SE2020279

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5481
  • Medicago truncatula
  • SE2020279
  • Mutator
  • M90
  • MtChr2:18407190-18407504
  • TTTTGGATA
  • TTGGATAGGCCAAACACTATTTTTTTGTCCTTTAAATTTGATAAAAATATTGAATTAATCCTTTATGTTTTTTAAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT  G  T       --A  C      TTT T C     A                AAT       T  T                A        TT --    TTTTTAAATTTCAAATAGGCCATTTAATTGTTAATTCAATCATCTATTTAATTTTTTT
  TT GA AGGCCAA   CA TATTTT   G C TTTAA TTTGATAAAAATATTG   TAATCCT TA GTTTTTTAAGTTTCAA TAGATCCT  A  AATT                                                          
  || || |||||||   || ||||||   | | ||||| ||||||||||||||||   ||||||| || |||||||||||||||| ||||||||  |  ||||                                                          T
  AG TT TCCGGTT   GT ATAAAA   C G AAATT AAACTGTTTTTATAAC   ATTAGGA AT CAAAAAATTCAAAATT TATCCAGA  A  CTCA                                                          
AT  G  T       CAA  -      --C T A     C                ACT       C  T                -        -- AA    ACAATTAAATTATATAACAGTGGGAAAATTCGTGGATAAATTTTGATAATTTGAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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