SE2030280

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5482
  • Medicago truncatula
  • SE2030280
  • hAT
  • Hat16
  • MtChr5:26876577-26877142
  • ATGTGAAA
  • TAGGGCTGGCAATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGTGAAA     C   C     AC   ACCAACTCGAAAATAGTGCGAGATTCGATTCGATAATTGATTCGTTGAATTTGATTCATGAACCTAATGAGTCGAACTTGAGTTTAAAATTAAGCTCGTTAAATAAATGAGTTGAACTTGAACTAAATGTGGTTCGACTCGTTTGGTTCATGAACCAGCCCGATGTGTGTGTGTGTGTGTCTGTGTGTGCGTGCGTGTGTGTGTGAGAGAAGTGCATCTCAATTATAATGTAAAAGCTATACATGTAGTATATGG
        TAGGG TGG AATGA  CGA                                                                                                                                                                                                                                                               
        ||||| ||| |||||  |||                                                                                                                                                                                                                                                               A
        ATCCC ACC TTACT  AGC                                                                                                                                                                                                                                                               
AAAATGTA     A   T     -C   TCAGCTCAGTTTGGACAGACTCGAGCTAAGCTGAGCTATTCTTAACCAAGCCGAGCTTTGAGTTGAGCTCAAGCTTCGCTTGTAAAAAAATTTGAGCTCAAGCCGAGCAAATTTCAAGTGCTTGTCAAGCCAAGTCGAGCAAATGAGCTTAACATATAAAGTGTTTGGAAAAAAAAAACAGTTTTTATAAATTGAATAAATTTTATTTTTTTTTTCTTCATTTTGATACTTCGCATGTAATGATGACGTCCTGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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