Plant MITE

SE2020281

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5483
Medicago truncatula
SE2020281
Mutator
M4
MtChr7:13705760-13706042
TCAACAATA
AGGGTTAATGGTGCTTTACCCCCTGTAATATAGATTATTTTTTATTTTTCCCCTGTAAAATATATTTTTTGATTTACCCCTGTAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TCAACAAT                    C            A        TA       -            A      G         -       AAAAAAAA      AATACGATTTTATTTTATTTTTCAGAATTTTTTC
        AGGGTTAATGGTGCTTTACC CCTGTAATATAG TTATTTTT  TTTTTCC CCTGTAAAATAT TTTTTT ATTTACCCC TGTAAAA        AAAATT                                  
        |||||||||||||||||||| |||||||||||| ||||||||  ||||||| |||||||||||| |||||| ||||||||| |||||||        ||||||                                  G
        TCCCAATTACCACGAAATGG GGACATTATATC AGTAAAAA  AAAAGGG GGACATTTTATA AAAAAA TAAATGGGG ACATTTT        AAATAA                                  
ATAACAAC                    A            C        CC       A            A      A         G       ------AT      AAAACCTTATAGGGGGATTATCCAGTATTTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020281

TCAACAATAGGGTTAATGGTGCTTTACCCCCTGTAATATAGATTATTTTTTATTTTTCCCCTGTAAAATATATTTTTTGATTTACCCCTGTAAAAAAAAAAAAAAAATTAATACGATTTTATTTTATTTTTCAGAATTTTTTCGTTTTTTTATGACCTATTAGGGGGATATTCCAAAAAATAAATATTTTACAGGGGGTAAATAAAAAAAAATATTTTACAGGAGGGAAAACCAAAAATGACCTATATTACAGGAGGTAAAGCACCATTAACCCTCAACAATA

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