SE2050284

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5486
  • Medicago truncatula
  • SE2050284
  • PIF/harbinger
  • To2
  • AC146793:33545-33933
  • TTA
  • AGGCTTTGTTTGGGTGTTTGTAGGGGAAGGGAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              T    GT      AG     ---         TGGAGGGATGAGATTAGAAGGAAAAAATAGAGAAATCTTTCAAAAGTTTTGAGAGAATGGTTTTGTAGAGAATGATAAATAAATACTTATGATTAATGTATTTTTAACTTTGAAAGTATTATAACCATAGATTGAATTTGAAAAACTT
  AGGCTTTGTTTGGG GTTT  AGGGGA  GGAGG   GGAGGGTTT                                                                                                                                                    
  |||||||||||||| ||||  ||||||  |||||   |||||||||                                                                                                                                                     
  TCCGAGACAAACCC CAAA  TCTCCT  CCTCC   ACTTTTTTT                                                                                                                                                    
AT              T    AC      CA     CAA         TTCCTTCCTTCTTCACCTTTCTTACCTCTCTATACTCTCACCTCCCGAAACCCCCCAAATCAAAAGAAGTATTATGTTTTAGGGGGATTAAACCTCCTTGGTCTTTTAACATAACCTCCTCAAACCTCCCAAAACCCCCTGAACCCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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