Plant MITE

SE2020285

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5487
Medicago truncatula
SE2020285
Mutator
M37
AC233685:48458-48661
AATTAATAA
ATTAATAAGGGTCTTGCTAACAAGTGTGTGCTTAGGACACTTGTTAAGGATTTAAAAATGGGAA

Secondary structure and sequence

TSD TIR

5'

3'

 A      AA   TCT    A        GTG      A  C   T      T  A          ----   TTGATAACTTTCATGTAGAAAAAGTTGTTCTTT
  ATTAAT  GGG   TGCT ACAAGTGT   CTTAGG CA TTG TAAGGA TT AAAATGGGAA    CAA                                 
  ||||||  |||   |||| ||||||||   |||||| || ||| |||||| || ||||||||||    |||                                  
  TAATTA  CCC   ACGA TGTTCACG   GAATTC GT AAC ATTCTT AA TTTTACCTTT    TAG                                 
AA      -A   TTT    C        --G      C  A   T      C  A          AAAA   AACCCTAAACACATAAGTTGTGTAACTTTGTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020285

AATTAATAAGGGTCTTGCTAACAAGTGTGTGCTTAGGACACTTGTTAAGGATTTAAAAATGGGAACAATTGATAACTTTCATGTAGAAAAAGTTGTTCTTTGATGTTTCAATGTGTTGAATACACAAATCCCAAGATAAAATTTCCATTTTAAACTTCTTATCAAATGCCTTAAGGGCACTTGTCAGCATTTCCCAATTAATAA

Copy Cancel