SE2010290

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5492
  • Medicago truncatula
  • SE2010290
  • Tc1/Mariner
  • St21
  • MtChr5:39001043-39001387
  • TA
  • TACTCCCTCCGTCTTGAAATATAAGCAAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
            C     A      C       ATTCA     --    TCCCAAAATATAAGCAA    GACAAACTTTTATTTTATTTAATCTTATTTTTAAAAAAAATATCTTTTCCAATAAAAACTTTTTCTTATTCTCATGAAATTAAATGCAAATTACATTTAATTTTCTCTCTCTTTT
TACTCCCTCCGT TTGAA TATAAG AAAAAAA     TTTTC  TTTG                 AAAA                                                                                                                   
|||||||||||| ||||| |||||| |||||||     |||||  ||||                 ||||                                                                                                                    
ATGAGGGAGGCA GATTT ATATTT TTTTTTT     TGTTT  AGTG                 TGAA                                                                                                                   
            A     A      -       -----     TT    -----------------    TAATTTTTTTAATTTCATATTCTTAAACATCGTATCAAAAAAACACAAAAGAAACCTTATTCAAAATACCATTCTACATTTTTGTTAAAAGTAACCGTTAAGCAATACCTTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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