SE2020291

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5493
  • Medicago truncatula
  • SE2020291
  • Mutator
  • M2
  • MtChr5:29976176-29976377
  • TTTTAAAAT
  • TTTTAAAATGAGAAATGATATTTGTACAACCAATTTGTGACAACTTTTGTACAACTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
         T   A               A   A          C   T  -        CTCTCTCATACTCACAT      CTTATCATCTCTCTTCCTTTTTCTCTC
 TTTTAAAA GAG AATGATATTTGTACA CCA TTTGTGACAA TTT GT ACAACTTT                 GATGGT                           
 |||||||| ||| ||||||||||||||| ||| |||||||||| ||| || ||||||||                 ||||||                           T
 AAAATTTT CTC TTACTATAAACATGT GGT AGGTACTGTT AAA CA TGTTGAAA                 AAAAAG                           
T        -   G               A   A          A   T  C        ----------------C      AGAGAAGAATAACCAGTTTTTGTTACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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