Plant MITE

SE2010292

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5494
Medicago truncatula
SE2010292
Tc1/Mariner
St26
MtChr4:38033928-38034205
TA
TACTCCATCTGTCTCACAAT

Secondary structure and sequence

TSD TIR

5'

3'

      A         C   TATT   ------------------TCT     ATTTTTTTATTTTTTCAAAATAATTGTCACTTTACAATATCAATGTAACATTTATTATTTTTTTTCCACTATTATACCCTTATTTATTGAATTTC
TACTCC TCTGTCTCA AAT    GTC                     TTGAT                                                                                               
|||||| ||||||||| |||    |||                     |||||                                                                                                
ATGAGG AGGCAGAGT TTA    CAG                     TAATT                                                                                               
      A         A   TAAT   CAAATTCAAAATACGTACTAA     CTTTTACTAATTAACACAACTAAAATTACCATTTTAATTATTGTAAATAATTTTGTAAGAATAATTAACATCAATCACCTCATTAATTCAACATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010292

TACTCCATCTGTCTCACAATTATTGTCTCTTTGATATTTTTTTATTTTTTCAAAATAATTGTCACTTTACAATATCAATGTAACATTTATTATTTTTTTTCCACTATTATACCCTTATTTATTGAATTTCATACAACTTAATTACTCCACTAACTACAATTAATAAGAATGTTTTAATAAATGTTATTAATTTTACCATTAAAATCAACACAATTAATCATTTTCTTAATAATCATGCATAAAACTTAAACGACTAATATTATGAGACGGAAGGAGTA

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