Plant MITE

SE2020294

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5496
Medicago truncatula
SE2020294
Mutator
M45
MtChr2:22142463-22142655
ATAAATTTA
TAAATTTAGGGTTATGCTAACCGGTGCCTTTAGGGCAATGGTTAAGGAAACCAAAAAAAGAAAATTTTAAGTTGAAA

Secondary structure and sequence

TSD TIR

5'

3'

A        -   TT        C             C             A     AAA  AA      AA       -------ATACC         AC
 TAAATTTA GGG  ATGCTAAC GGTGCCTTTAGGG AATGGTTAAGGAA CCAAA   AG  AATTTT  GTTGAAA            ACTTTTTAA  
 |||||||| |||  |||||||| ||||||||||||| ||||||||||||| |||||   ||  ||||||  |||||||            |||||||||   
 ATTTAAAT CCT  TACGATTG TCACGGGAGTCCC TTACCAATTCCTT GGTTT   TC  TTAAAA  TAACTTT            TGAGGAGTT  
         A   TT        T             T             -     ATA  -A      CG       GAACACGTAAGT         TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020294

ATAAATTTAGGGTTATGCTAACCGGTGCCTTTAGGGCAATGGTTAAGGAAACCAAAAAAAGAAAATTTTAAGTTGAAAATACCACTTTTTAAACTTTTGAGGAGTTGAATGCACAAGTTTCAATGCAAAATTACTATATTTGGTTCCTTAACCATTTCCCTGAGGGCACTTGTTAGCATTTTCCATAAATTTA

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