SE2050296

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5498
  • Medicago truncatula
  • SE2050296
  • PIF/harbinger
  • To4
  • MtChr4:23353638-23353868
  • CAA
  • GGGCCCATTTGGATTGGCTTACTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAA     CA              C     TTAT      -        C           T              TAATTCATA   TCTCACTAACAAAAATTGTATCTTCATAAGC
   GGGCC  TTTGGATTGGCTTA TTTTT    CTTATG AAAAATAG TTATGCAAATA ATAAGCTTTTATGT         AGT                               
   |||||  |||||||||||||| |||||    |||||| |||||||| ||||||||||| ||||||||||||||         |||                               T
   CCCGG  AAACCTAACCGAAT AAAAA    GAATAC TTTTTGTT AATACGTTTAT TATTCGAAAATACA         AAG                               
AAC     AC              -     -CTC      G        A           T              -----TAAT   TATTCGAACGATTCCATCAAATACTTTTTCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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