Plant MITE

SE2010298

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5500
Medicago truncatula
SE2010298
Tc1/Mariner
St6
MtChr8:1272771-1273063
TA
TACTCCCTCCGTCCCGTTTTATCTGAG

Secondary structure and sequence

TSD TIR

5'

3'

     C           TT  T     ----   -      TTCACACATATTAAGAAAAAGTGTATAAGTGAAAGAGAGAGAAAAATAGTTTTGAGTGTCTTGTTAAGTATTGGTGCATTCTTTCTTATCATAAATGCAAAGTAGAAT
TACTC CTCCGTCCCGT  TA CTGAG    CTT TTTCTT                                                                                                            
||||| |||||||||||  || |||||    ||| ||||||                                                                                                             
ATGAG GAGGCAGGGTA  AT GACTC    AAC TTTTTT                                                                                                            
     A           TT  T     AGTA   G      TACAACAGGGTTTTTTTAACTGGGTAAAGTGAAAAGTTATGTTGTTATTAATGAAAAAAGGTTAATATTGAGATTAATTATGATGAAAGTAGTGAGGGTTAAGTTATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010298

TACTCCCTCCGTCCCGTTTTATCTGAGCTTTTTCTTTTCACACATATTAAGAAAAAGTGTATAAGTGAAAGAGAGAGAAAAATAGTTTTGAGTGTCTTGTTAAGTATTGGTGCATTCTTTCTTATCATAAATGCAAAGTAGAATATATTGAATTGGGAGTGATGAAAGTAGTATTAATTAGAGTTATAATTGGAAAAAAGTAATTATTGTTGTATTGAAAAGTGAAATGGGTCAATTTTTTTGGGACAACATTTTTTTGCAAATGACTCAGTTATTATGGGACGGAGAGAGTA

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