Plant MITE

SE2010301

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5503
Medicago truncatula
SE2010301
Tc1/Mariner
St3
MtChr8:27044339-27044625
TA
TACTCCCTCCGTCCCT

Secondary structure and sequence

TSD TIR

5'

3'

    C   C       ------AT      ACACCCATTT   -       TTGTCCCTAAATGTAAATCTCTTTTTAAATTATTAGATGCATTTATTATTTTTTTCCCAAACATACCCCTAATTAATACCATCATCTTGCCTTGAAATATG
TACT CCT CGTCCCT        ATCTAA          GAT TTTATTT                                                                                                     
|||| ||| |||||||        ||||||          ||| |||||||                                                                                                      
ATGA GGA GCAGGGA        TGTAAG          TAA AGAAAAA                                                                                                     
    A   A       ATTACATC      ----------   C       GTGTAAAAATTCTTTTCAACAGTCACATTAATTACACAGACAAAACACACAATTATAATGCTTTAACAGGATACAAACATACACATAATTTAAACTGAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010301

TACTCCCTCCGTCCCTATATCTAAACACCCATTTGATTTTATTTTTGTCCCTAAATGTAAATCTCTTTTTAAATTATTAGATGCATTTATTATTTTTTTCCCAAACATACCCCTAATTAATACCATCATCTTGCCTTGAAATATGAAAAGTCAAATTTAATACACATACAAACATAGGACAATTTCGTAATATTAACACACAAAACAGACACATTAATTACACTGACAACTTTTCTTAAAAATGTGAAAAAGACAATGAATGTCTACATTAAGGGACGAAGGAAGTA

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