Plant MITE

SE2030302

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5504
Medicago truncatula
SE2030302
hAT
Hat24
MtChr7:24417652-24418253
ACAACAGC
CATAGTAGTCAATAGCGGCCAATAGCGCCGCTATAGCGGCC

Secondary structure and sequence

TSD TIR

5'

3'

ACAACAGC         C        CCA      C   TA           T    ----   T        - G      ACGCAACAAGCCATAGCGTTGCGGTGTGAGATAGCGGCGCAACGCTTCGTAGCGATTTTGCAGTTTAGAACCGCTATTTCATTTTAAGAGAAAATACAAAATTGTCCTTGGTTTAAAAAAAAAAGGGTACTTCTGTAAATCTTCCTCTGCTTTGCTGCTGTTCTGTAAAACTTCTTCACCTCTGCTGTAAATCTTCCTCTACTTTGTCGTGTTTACTCTGTTATC
        CATAGTAGT AATAGCGG   ATAGCG CGC  TAGCGGCCGCG GGTG    CGG GCGGTGCC G AGCGCT                                                                                                                                                                                                                                 
        ||||||||| ||||||||   |||||| |||  ||||||||||| ||||    ||| |||||||| | ||||||                                                                                                                                                                                                                                  
        GTATCATCA TTATCGCC   TATCGC GCG  ATCGCCGGTTG GGGT    ACG ATATCGCC T ATCGCG                                                                                                                                                                                                                                 
CGACAACA         A        ---      C   -C           -    TTTT   -        C -      TATCGCGATACTGGCGATAAAGTATTTTTGTTTTTGTTGTTTTTATTCCTTTGTCTCTCTCGTCTTATCTCAAAATATACTTGTTTTATCTCCTAACAAACATGTTTGATGTTTGTCTTTGTCTCTCTCGTCTTACCTCAAACCTTAGTTATTATTGTTTCTATTGATCTTGTTTTATCATTGTCCTGTTGTCTCAAAACTCTAACAATTTGTTTTTTTATTGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030302

ACAACAGCCATAGTAGTCAATAGCGGCCAATAGCGCCGCTATAGCGGCCGCGTGGTGCGGTGCGGTGCCGGAGCGCTACGCAACAAGCCATAGCGTTGCGGTGTGAGATAGCGGCGCAACGCTTCGTAGCGATTTTGCAGTTTAGAACCGCTATTTCATTTTAAGAGAAAATACAAAATTGTCCTTGGTTTAAAAAAAAAAGGGTACTTCTGTAAATCTTCCTCTGCTTTGCTGCTGTTCTGTAAAACTTCTTCACCTCTGCTGTAAATCTTCCTCTACTTTGTCGTGTTTACTCTGTTATCCTGTTATTTTTTTGTTTAACAATCTCAAAACTCTGTTGTCCTGTTACTATTTTGTTCTAGTTATCTTTGTTATTATTGATTCCAAACTCCATTCTGCTCTCTCTGTTTCTGTTTGTAGTTTGTACAAACAATCCTCTATTTTGTTCATATAAAACTCTATTCTGCTCTCTCTGTTTCCTTATTTTTGTTGTTTTTGTTTTTATGAAATAGCGGTCATAGCGCTATGCGCTATCCCGCTATAGCATTTTTGGGGTTGGCCGCTACGCGCCGCTATCCGCTATTAACTACTATGACAACAGC

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