SE2010305

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5507
  • Medicago truncatula
  • SE2010305
  • Tc1/Mariner
  • St3
  • MtChr4:19353008-19353294
  • TA
  • TACTTCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
        CC  C  ATATCTAAGCACTCATTTGATTTTATTTTTGTCCCTAAATGTATACTTATTTTCAAATTACTAGATGCATTTATTATTTTTTTCCTAAACATACCCCTAATTAATACTACTATCTTGTCTTGAAATATG
TACTTCCT  GT CT                                                                                                                                 
||||||||  || ||                                                                                                                                 A
ATGAGGGA  AC AG                                                                                                                                 
        -T  -  GGAATTACATCCGTAGGTAACGAAAAAAGTGTAAAGAATTCTTTTCAACAGTCACATTAATTACACAGACAAAATACACAATTATAATGTTTTAACAGTAAACAAACATACACATAATTTAAACTGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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