SE2020306

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5508
  • Medicago truncatula
  • SE2020306
  • Mutator
  • M93
  • MtChr3:32611111-32611544
  • TAAGTGTAA
  • AGGTTTTAATATGTCTTTAGTCCTTGCACTTTCATCAGATTTTGGTATTGGTCCCTACACTTTTTTTTGTTTGGAATTGGCCCCTGCACTTTGTAAAAATATTGGTATTGGTCCCTCTATTAACTTTCTGTTAAAAAAAGAACACAAAACTATTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAGTGTA      T   A    T  A                                     A                 A     C                                     A                       -          T   TATTGGTCTC    TTTTGTAAAAATATTGGTATTGGTCCCTGCACTTTGTAAAAAT
        AGGTTT AAT TGTC TT GTCCTTGCACTTTCATCAGATTTTGGTATTGGTCCCT CACTTTTTTTTGTTTGG ATTGG CCCTGCACTTTGTAAAAATATTGGTATTGGTCCCTCT TTAACTTTCTGTTAAAAAAAGAA CACAAAACTA TGG          TGCA                                           
        |||||| ||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||          ||||                                           A
        TCCAAA TTA ACAG AA CAGGGACGTGAAAGTAGTCTAAAACCGTAACCAGGGA GTGAAAAAAAACAAACC TAACC GGGACGTGAAACATTTTTATAACCATAACCAGGGAGA AATTGAAAGACAATTTTTTTTTT GTGTTTTGGT GCC          TCAC                                           
AATGTGAA      T   C    T  C                                     C                 G     A                                     C                       T          T   ----------    GGTGCACCGGGTTAGTAAAGTGCGTTGCACCGTGGTTATAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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