SE2020308

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5510
  • Medicago truncatula
  • SE2020308
  • Mutator
  • M39
  • MtChr5:1207372-1207752
  • TAATAAAAG
  • AAGGCTAAAATATGGTTTTGGTCCCTGCAAATATGTCTCGTTTTGGTTTTAGTCCCTGTAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATAA                                                                AAAA                      -----    ----     ---     --  --   ---    CCCTGCAGGGACTATTTCCAAAAACAAAATATTTTGCAGGGACCTTTTTCAAAATCAAAAGA
      AAGGCTAAAATATGGTTTTGGTCCCTGCAAATATGTCTCGTTTTGGTTTTAGTCCCTGTAAAAA    TTGTTGTTTTTGGTCCCTGCAA     AATA    TTTTG   TTTTT  GG  AAA   TAGT                                                              
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||     ||||    |||||   |||||  ||  |||   ||||                                                               
      TTCCGATTTTATACCAAAACCAGGGACGTTTATACGGAGCAAAACCAAAATCAGGGACGTTTTT    AACAACAAAAACCAGGGACGTT     AGAG    ACCAA   CAGGG  CG  GTG   ACAC                                                              
AAATAA                                                                AAAA                      TATAC    TAAA     AAC     AC  AG   AAA    TATTAAACGTGTGCACAGTGTACTACTGACTTGGTAAATAATCTCTTTATCAGGGACGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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