SE2010316

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5518
  • Medicago truncatula
  • SE2010316
  • Tc1/Mariner
  • St1
  • MtChr8:35639321-35639471
  • TA
  • TCCCTCCGGTCCTTATTATAAGAAAAAGTTGACTTTTTAGGTTCATAGAATAATTAATGTATCTTATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAC                         A            A       A A    TTA        TA  GTAA
   TCCCTCCGGTCCTTATTATAAGAAA AGTTGACTTTTT GGTTCAT G ATAA   ATGTATCT  TT    
   ||||||||||||||||||||||||| |||||||||||| ||||||| | ||||   ||||||||  ||    A
   AGGGAGGCCAGGAATAATATTCTTT TTAATTGAAAAA CCAAGTA C TATT   TACATAGA  AG    
ATA                         G            A       A A    CAC        TC  ATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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