SE2020318

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5520
  • Medicago truncatula
  • SE2020318
  • Mutator
  • M9
  • MtChr3:37211872-37212173
  • TAAAAATAA
  • AGGTTTAATAGCAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAATA                     CCTAT   -  - TACGAAGTTGCGATTTTGGCCCCCTAAGAAAAAAACTACAAAATCGCCCAATAAGTTTTGCAATTGTAGCAGTTTTGGCCCCCCAAGACCAATTTTTGGTAAAAAAATAATA
        AGGTTTAATAGCAGTTTTCGT     AAC TT T                                                                                                                
        |||||||||||||||||||||     ||| || |                                                                                                                A
        TCCGAATTATCGTTAAAATCG     GGG AT T                                                                                                                
AATAAAAA                     -----   A  A TTTTTTTGATGTTTTGGCGGGGGATTCAAAACGTAAATACCGTCAAAACCGGGGGTGCTAGTTAAAACTGAGCCAGATGCGACTGCACCGTAGGATTCACTCCACGGTGCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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