SE2020319

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5521
  • Medicago truncatula
  • SE2020319
  • Mutator
  • M1
  • MtChr4:2266975-2267381
  • ATTTAGATA
  • ATTTAGATAGGTCAAATGCATCTAAAGGTCTTTAAGTTTTTCATTTTTTCTAAAGTAGTCCTTTAAGTTTCAAAGGTCCTAAACAAGTCCTTTTAGTTTTTGAATCGTTTCAAACAAGTCCTATTGTAGA

Secondary structure and sequence

TSD    TIR
5'



3'
         A                 -    -           - A             A             C       C          C                              CT   G    TAACATAGT    AAT  C   CTTAAACTCATCTT     C   -ATCT   TCCTAA    CACTTAAA   A     -   T
 ATTTAGAT GGTCAAATGCATCTAAA GGTC TTTAAGTTTTT C TTTTTTCTAAAGT GTCCTTTAAGTTT AAAGGTC TAAACAAGTC TTTTAGTTTTTGAATCGTTTCAAACAAGTC  ATT TAGA         TGGT   TG TTC              TGATA CAA     GGC      CACC        ATT GTCAT CTT 
 |||||||| ||||||||||||||||| |||| ||||||||||| | ||||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||  ||| ||||         ||||   || |||              ||||| |||     |||      ||||        ||| ||||| ||| T
 TAGATTTA CCAGTTTACGTAGATTT CCAG AAATTCAAAAA G AAAAAGGATTTCA CAGGAAATTCAAA TTTTCAG GTTTGTTTAG AAAATCAAAAACTTAGCAAGGTTTGTTCAG  TAA ATCT         ACCA   AC AAG              ACTAT GTT     TCG      GTGG        TAA CAGTA GGA 
A        -                 T    G           A C             G             A       A          A                              --   A    ---CCTACT    -CT  T   -----------TCT     C   GTTTC   TAATAG    --------   A     C   T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End