SE2020320

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5522
  • Medicago truncatula
  • SE2020320
  • Mutator
  • M95
  • MtChr8:12959076-12959651
  • TAAAAAATT
  • GGCTTAATTACACCACGGGTCCTTTATGTTTGACGTTTGTAACAGATAGGTCCTTTAAGTTTGTTTTGTAACAGATAGGTCCTTTAACTTTGTAACAGTATACAACTAAGTCCTTCCGTTAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAATT                 G        T                                                                      G ATA                     -   C    AAAAAAA    G  GTGGCTGTGAAGTCTGTGATGTGGCATGCAAAAGGCAAAAACATGTTATTAATTGGAAAATGTTATGATTATTTTTGAAGATTGCTAATGTAACTTGCATGTTGTTGGCTTTAACTTATGTTATTGCAACAATAAGCT
         GGCTTAATTACACCACG GTCCTTTA GTTTGACGTTTGTAACAGATAGGTCCTTTAAGTTTGTTTTGTAACAGATAGGTCCTTTAACTTTGTAACA T   CAACTAAGTCCTTCCGTTAAC TCA CGTC       CGCT AC                                                                                                                                          
         ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||| ||| ||||       |||| ||                                                                                                                                           
         CCGAATTAATGTGGTGT CAGGAAAT CAAACTGCAAACATTGTCTATCCAGGAAATTCAAACAAAACATTGTCTATTCAGGAAATTGAAACATTGT A   GTTGATTCAGGAAGGCAATTG TTT ATAA       ATAA AA                                                                                                                                          
TTAAAAAAT                 A        T                                                                      G CAC                     T   -    -------    -  GAATTTTGTTTTGTGAATTGTGTAATGTAATTACAATGTGAGTTGTTACAAAGTAGCAGATTGTACTAACGTGCGAATTTAATTTGATTTTTTTTGTTGTACAATGTTCCTAATAAGTGAAATGAACTAATTTATAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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