Plant MITE

SE2020322

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5524
Medicago truncatula
SE2020322
Mutator
M9
MtChr8:30316560-30316891
TAAAGAAAA
AGGCTTAATAACAGTTTTCACCCCCTAACTTTCACGAAGTTGCGATTTTGACCCACTAAGAAAAAAACTACAAAACTGCCTCTAAGCTCTGTAACTGTAGCAGTTTTGGCCCCCCTAAGGCCAATTTTTGG

Secondary structure and sequence

TSD TIR

5'

3'

TAAAGAAA          A  G    CA            CA                A   A          --                 -    CTC    AC   A               CT          TT   TAAAAAAAAAACA    GCACCTCACTTAGGGT
        AGGCTTAATA CA TTTT  CCCCCTAACTTT  CGAAGTTGCGATTTTG CCC CTAAGAAAAA  AACTACAAAACTGCCTC TAAG   TGTA  TGT GCAGTTTTGGCCCCC  AAGGCCAATT  TGG             CGTG                
        |||||||||| || ||||  ||||||||||||  |||||||||||||||| ||| ||||||||||  ||||||||||||||||| ||||   ||||  ||| |||||||||||||||  ||||||||||  |||             ||||                 
        TCCGAATTAT GT AAAA  GGGGGATTGAAA  GTTTCAACGCTAAAAC GGG GATTCTTTTT  TTGATGTTTTGGTGGGG ATTT   ACGT  ACA CGTCAAAACCGGGGG  TTCCGGTTAA  ACC             AGTC                
AAAAGAAA          C  A    TC            AA                C   G          GT                 G    AAA    GT   C               --          --   -----------TG    AGATGCGACTGCACCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020322

TAAAGAAAAGGCTTAATAACAGTTTTCACCCCCTAACTTTCACGAAGTTGCGATTTTGACCCACTAAGAAAAAAACTACAAAACTGCCTCTAAGCTCTGTAACTGTAGCAGTTTTGGCCCCCCTAAGGCCAATTTTTGGTAAAAAAAAAACACGTGGCACCTCACTTAGGGTGCCACGTCAGCGTAGACTGAGTCCAAATTGGCCTTGGGGGCCAAAACTGCCACATGTGCAAAATTTAGGGGGTGGTTTTGTAGTTTGTTTTTCTTAGGGGGCCAAAATCGCAACTTTGAAAAAGTTAGGGGGCTAAAAATGCTATTAAGCCTAAAGAAAA

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