SE2020325

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5527
  • Medicago truncatula
  • SE2020325
  • Mutator
  • M35
  • MtChr1:13073661-13074218
  • TAATTCTAA
  • AGGCTTAATTACACTGTTGGTCATCGCATTTTGACCAGCTCACGAAAATGGTTTTGCCTCTTTCAAATCGAACAAAACCGTCCTAAACTATCATGTTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TAATTCTA               G      A  G        C                  T                             -        C        TTTTT    A       C                 CT  -                                     -                                      A                 C    C     A                      GAAACAT
        AGGCTTAATTACACT TTGGTC TC CATTTTGA CAGCTCACGAAAATGGTT TGCCTCTTTCAAATCGAACAAAACCGTCC TAAACTAT ATGTTTTT     TGCA TTTTAGT CTACCTCCTATTTTCAA  TC AGAAATGCAGAGAAATGGCAGTTTTAGACCTACCTCC TATGCTCAACCATGAAATAAACAAGGAATAAAACATGT GGTACAAGGAATCTACT TATT AGCAC CTAACCAAAAAAACCTTAATTT       
        ||||||||||||||| |||||| || |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||     |||| ||||||| |||||||||||||||||  || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||||||        
        TCCGAATTAATGTGA AACCAG AG GTAAAACT GTCGAGTGCTTTTACCAG ACGGAGAAAGTTTAGTTTGTTTTGGCAGG ATTTGATA TATAAAAA     ACGT AAAATCA GATGGAGGATAAAAGTT  AG TCTTTGCGTCTCTTTACTGTCAAAATCTGGATGGGGG ATACGAGTTGGTACTTTATTTGTTCCTTATTTTGTACA CCATGTTCCTTAGGTGA ATAA TTGTG GATTGGTTTTTTTGGGATTAAA       
AATCTTAA               A      G  A        T                  T                             G        -        -----    C       A                 -T  A                                     G                                      C                 A    T     C                      GATTCTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End