Plant MITE

SE2030326

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5528
Medicago truncatula
SE2030326
hAT
Hat26
MtChr7:18326772-18327151
ACCCTATA
CAGGGGTGGATC

Secondary structure and sequence

TSD TIR

5'

3'

ACCCTATA            ---CAG   A  -  TAT    A   CAAAATTTGCAAAGCAACTATATATATTAACAAAGTAAAGCTTTAACAACTTAAAAACTATAGCAAAGTGGTTTGGGTGAGAGCATTTTACCATGGTGTTACAGGTTCGATTCCCTGCAACACCATTTTTAATATTAATAATTTAAAA
        CAGGGGTGGATC      ACA TT GA   TGGT TGG                                                                                                                                                    
        ||||||||||||      ||| || ||   |||| |||                                                                                                                                                    A
        GTCCCCGCCTAG      CTT TG AC   CACA CCG                                                                                                                                                    
ATATCCCA            ATGACA   -  T  ---    -   TCAACGGTGTGGTCTATATGTAATTCATATATATATTATATTCAGTAGTTACATAACTTCAAAGAAACAATCAGATTGCCATATGTAAACTACCAACCGAACGTCTAGGACACAAGTTGAGAGCCGCTCAACGTCAAAAACTAGAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030326

ACCCTATACAGGGGTGGATCCAGACAATTGATATTGGTATGGCAAAATTTGCAAAGCAACTATATATATTAACAAAGTAAAGCTTTAACAACTTAAAAACTATAGCAAAGTGGTTTGGGTGAGAGCATTTTACCATGGTGTTACAGGTTCGATTCCCTGCAACACCATTTTTAATATTAATAATTTAAAAAAAAAGATCAAAAACTGCAACTCGCCGAGAGTTGAACACAGGATCTGCAAGCCAACCATCAAATGTATACCGTTAGACTAACAAAGAAACTTCAATACATTGATGACTTATATTATATATATACTTAATGTATATCTGGTGTGGCAACTGCCACACCATGTTTCACAGTAGATCCGCCCCTGACCCTATA

Copy Cancel