SE2020327

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5529
  • Medicago truncatula
  • SE2020327
  • Mutator
  • M79
  • MtChr4:23514207-23514623
  • TAGGCTTAA
  • GGCTTAATAGTAGTTTTGGCTCCCTAAGTTTTAAGAAGTTGCGATTTTGGCTCCCTAACTAAATAAACTACAAAACCGTCATCTAAGTATTGACTTTTTTTTTGCAGTTTTGGCCCCTCAGGTCAATTTTGACCAAGTCAAAGTTGACGTGGACGCCACGTGTGTATTTATTT

Secondary structure and sequence

TSD    TIR
5'



3'
TA          T               A                       C           A                 A   -               TTT              C  A                     A  TG         C                 TATAATTA           AAAAA           TA
  GGCTTAATAG AGTTTTGGCTCCCTA GTTTTAAGAAGTTGCGATTTTGG TCCCTAACTAA TAAACTACAAAACCGTC TCT AAGTATTGACTTTTT   TGCAGTTTTGGCCC TC GGTCAATTTTGACCAAGTCAA GT  ACGTGGACG CACGTGTGTATTTATTT        TTAAAAAATTT     ATATATTTTTT  
  |||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||   |||||||||||||| || ||||||||||||||||||||| ||  ||||||||| |||||||||||||||||        |||||||||||     |||||||||||  A
  CCGAATTATC TCAAAACCGGGGGAT CAAAATTCTTCAACGCTAAAACC GGGGATTGATT ATTTGATGTTTTGGCGG GGA TTCATAACTGAAAAA   ACGTCAAAACCGGG AG CCGGTTAAAACTGGTTCAGTT CG  TGTACCTGC GTGCACACATAAATAAA        AATTTTTTAAA     TATATAAAAAA  
TA          T               A                       A           C                 -   A               ---              -  A                     A  TG         A                 ---TAAAA           -ATTA           TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End